Bio-Agents MCP
BasicBio-Agents MCP is a collection of microservices and clients designed for natural language interaction with biological databases, including the Protein Data Bank and ChEMBL. It features a natural language interface, modular architecture, and is built using the FastMCP framework.
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Overview
Bio-Agents MCP is a collection of microservices and clients designed for natural language interaction with biological databases, including the Protein Data Bank and ChEMBL. It features a natural language interface, modular architecture, and is built using the FastMCP framework.
Installation
1Install the package
npx
docker-compose up2Add to Claude
Add this configuration to your claude_desktop_config.json:
claude_desktop_config.json
{
"mcpServers": {
"bio-agents-mcp": {
"command": "npx",
"args": [
"-y",
"docker-compose up"
]
}
}
}3Verify installation
Restart Claude Desktop, then ask:
"What tools do you have available from Bio-Agents MCP?"
Prerequisites
- Node.js 18 or higher
- npm or npx available
- Claude Desktop or Claude API access
Configuration
No configuration required. This server works out of the box.
Usage Examples
List Resources
"What resources are available in Bio-Agents MCP?"
Claude will query available resources and return a list of what you can access.
Get Details
"Show me details about [specific item] in Bio-Agents MCP"
Claude will fetch and display detailed information about the requested item.
Create New
"Create a new [item] in Bio-Agents MCP with [details]"
Claude will use the appropriate tool to create the resource and confirm success.
Works with Bio-Agents MCP
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