Biomart MCP
BasicBiomart MCP is a server that interfaces with Biomart, utilizing the Model Context Protocol (MCP) to standardize how applications provide context to large language models (LLMs). It allows for data retrieval and integration into various applications.
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Overview
Biomart MCP is a server that interfaces with Biomart, utilizing the Model Context Protocol (MCP) to standardize how applications provide context to large language models (LLMs). It allows for data retrieval and integration into various applications.
Installation
1Install the package
npx
Clone the repository from GitHub, install the necessary dependencies, and run the server using the provided commands.2Add to Claude
Add this configuration to your claude_desktop_config.json:
claude_desktop_config.json
{
"mcpServers": {
"biomart-mcp": {
"command": "npx",
"args": [
"-y",
"Clone the repository from GitHub, install the necessary dependencies, and run the server using the provided commands."
]
}
}
}3Verify installation
Restart Claude Desktop, then ask:
"What tools do you have available from Biomart MCP?"
Prerequisites
- Node.js 18 or higher
- npm or npx available
- Claude Desktop or Claude API access
Configuration
No configuration required. This server works out of the box.
Usage Examples
List Resources
"What resources are available in Biomart MCP?"
Claude will query available resources and return a list of what you can access.
Get Details
"Show me details about [specific item] in Biomart MCP"
Claude will fetch and display detailed information about the requested item.
Create New
"Create a new [item] in Biomart MCP with [details]"
Claude will use the appropriate tool to create the resource and confirm success.
Works with Biomart MCP
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