pyomop
pipStandardpyomop is a Python package for managing OHDSI OMOP clinical data models. It provides tools for LLM-based plain text queries, MCP server integration, and FHIR data import. It connects to OMOP databases and FHIR APIs. Developers use it for clinical data management, querying, and integration tasks.
5790Updated 1 month ago
Overview
pyomop is a Python package for managing OHDSI OMOP clinical data models. It provides tools for LLM-based plain text queries, MCP server integration, and FHIR data import. It connects to OMOP databases and FHIR APIs. Developers use it for clinical data management, querying, and integration tasks.
Installation
1Install the package
pip
pip install pyomop2Add to Claude
Add this configuration to your claude_desktop_config.json:
claude_desktop_config.json
{
"mcpServers": {
"dermatologist-pyomop-github": {
"command": "uvx",
"args": [
"pip install pyomop"
]
}
}
}3Verify installation
Restart Claude Desktop, then ask:
"What tools do you have available from pyomop?"
Prerequisites
- Python 3.10 or higher
- pip or uv package manager
- Claude Desktop or Claude API access
Configuration
No configuration required. This server works out of the box.
Usage Examples
List Resources
"What resources are available in pyomop?"
Claude will query available resources and return a list of what you can access.
Get Details
"Show me details about [specific item] in pyomop"
Claude will fetch and display detailed information about the requested item.
Create New
"Create a new [item] in pyomop with [details]"
Claude will use the appropriate tool to create the resource and confirm success.
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