PyMOL-MCP allows users to interact with PyMOL through natural language commands. It provides two-way communication between Claude AI and PyMOL to enhance molecular visualization and analysis.
PyMOL-MCP allows users to interact with PyMOL through natural language commands. It provides two-way communication between Claude AI and PyMOL to enhance molecular visualization and analysis.
To use Rosetta Symmetry, install prerequisites, clone the repository, setup the environment, and configure Claude Desktop.Add this configuration to your claude_desktop_config.json:
{
"mcpServers": {
"pymol-mcp": {
"command": "npx",
"args": [
"-y",
"To use Rosetta Symmetry, install prerequisites, clone the repository, setup the environment, and configure Claude Desktop."
]
}
}
}Restart Claude Desktop, then ask:
"What tools do you have available from PyMOL-MCP?"
No configuration required. This server works out of the box.
"What resources are available in PyMOL-MCP?"
Claude will query available resources and return a list of what you can access.
"Show me details about [specific item] in PyMOL-MCP"
Claude will fetch and display detailed information about the requested item.
"Create a new [item] in PyMOL-MCP with [details]"
Claude will use the appropriate tool to create the resource and confirm success.
We build custom MCP integrations for B2B companies. From simple connections to complex multi-tool setups.