Biomni
pipVerifiedBiomni provides biomedical AI agents with access to biomedical knowledge, including PubMed abstracts and biomedical ontologies. It connects to biomedical databases and APIs, enabling developers to build agents for literature review, ontology mapping, and biomedical research assistance.
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Overview
Biomni provides biomedical AI agents with access to biomedical knowledge, including PubMed abstracts and biomedical ontologies. It connects to biomedical databases and APIs, enabling developers to build agents for literature review, ontology mapping, and biomedical research assistance.
Installation
1Install the package
pip
pip install Biomni2Add to Claude
Add this configuration to your claude_desktop_config.json:
claude_desktop_config.json
{
"mcpServers": {
"snap-stanford-biomni-github": {
"command": "uvx",
"args": [
"pip install Biomni"
]
}
}
}3Verify installation
Restart Claude Desktop, then ask:
"What tools do you have available from Biomni?"
Prerequisites
- Python 3.10 or higher
- pip or uv package manager
- Claude Desktop or Claude API access
- API key for Biomni
Configuration
API Key Required
This server requires an API key from Biomni. Add it to your environment or config.
| Variable | Required | Description |
|---|---|---|
| BIOMNI_API_KEY | Yes | Your Biomni API key |
Usage Examples
List Resources
"What resources are available in Biomni?"
Claude will query available resources and return a list of what you can access.
Get Details
"Show me details about [specific item] in Biomni"
Claude will fetch and display detailed information about the requested item.
Create New
"Create a new [item] in Biomni with [details]"
Claude will use the appropriate tool to create the resource and confirm success.
Works with Biomni
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